Changelog

0.0.21 (2019-07-08)

Bug Fixes

  • add debug log message in ssclash (8e50b10)
  • add debug log message in ssclash (beb4935)
  • avoid key errors if all parameters don’t exist with pdbqual command (ea0e556)
  • change api key for semantic delivery (8eba464)
  • change dependencies in setup.py (eb5c0be)
  • change depreacted CI var in gitlab ci conf file (74463c0)
  • change depreacted CI var in gitlab ci conf file (4464019)
  • escape percent character within csh script for format function (a785ce9)
  • force python 2.7 dependency (99041c7)
  • force python 2.7 dependency (5f3380d)
  • future dependency in dockerfile (0d1d39e)
  • implement setting.get method used within pdbqual tool (a8d66dc)
  • implement setting.get method used within pdbqual tool (1832c26)
  • remove logger during serialization for distance restraint class (0465e1b)
  • remove sge_job_id var in csh script refine for sbatch options (a036e7f)
  • removed unicode strings during convert part (39d1d47)
  • revision of output slurm file for cns refine.csh (8d14ebd)
  • solve conflict issue between pdbqual and setup config parameters (48a05e2)
  • solve import issue with pdbqual command (737dd53)
  • solve issue #24 (aeda4d1)
  • solve issue with missing alignment for evcoupling contacts (c6f3afc)
  • solve issue with warnings in the logger (990419e)
  • solve numpy dependency issue with hdbscan (bf3c81c)
  • solve several format issues in the new logging system (eff5776)
  • sphinx crash with 1.8 due to python 3 dependencies (fd0efa1)
  • syntax error for clashlist flag in aria project templates (9b270f0)
  • Update ariabase.py getstate (6c209af)
  • update doc confs with the new project tree (46dff44)
  • update dockerfile (541d72c)
  • update dockerfile (40b59e9)
  • update dockerfile (00d6865)
  • wget dependency in dockerfile (bdf572c)
  • wrong installation order in dockerfile for husky npm module (934a449)
  • wrong installation order in dockerfile for husky npm module (c83c314)
  • aria.core.TypeChecking: overwrite previous python3 patch (dbca55a)
  • aria.core.TypeChecking: solve byte string type checker issue when running the package with python3 (07fb1c6)

Features

  • add options to activate or deactivate pdq quality tools (pdbqual command) (4a54d05)
  • add structure_analysis_enabled option within conbox commands (e88a654)
  • add v2.3.7 aria project template (1b9fa48)
  • Automatic changelog (8fda476)
  • Automatic changelog (23e095b)
  • molecule settings hack in order to support multiple chains (164f187)
  • new logging system for aria core (223c58d)
  • new logging system for aria core (1fd579c)
  • safe xml tag checker for python3 (d8b091e)
  • semantic delivery gitlab (b11664f)