aria.core.Topology module¶
Summary¶
Classes:
AtomGroup |
|
AtomGroupSettings |
|
AtomGroupXMLPickler |
|
BaseAtom |
|
BaseAtomSettings |
|
BaseAtomXMLPickler |
|
BaseResidue |
|
BaseResidueSettings |
|
BaseResidueXMLPickler |
|
EquivalentGroup |
|
EquivalentGroupSettings |
|
EquivalentGroupXMLPickler |
|
Terminus |
|
TerminusSettings |
|
TerminusXMLPickler |
|
Topology |
|
TopologyXMLPickler |
Functions:
load_topology |
Data:
ALWAYS |
|
ARIA_ENV |
|
ARRAY |
|
ATOM_NOMENCLATURES |
|
ATOM_TYPE_UNKNOWN |
|
BOOL |
|
CCPN_EXTENSION |
|
DICT |
|
EQUIV_AROMATIC |
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EQUIV_ISOPROPYL |
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EQUIV_METHYL |
|
EQUIV_METHYLENE |
|
EQUIV_NTERMINUS |
|
FLOAT |
|
FLOAT64 |
|
GZIP |
|
INT |
|
LIST |
|
MODULE_NAME |
|
NO |
|
NOMENCLATURE_IUPAC |
|
NONE |
|
ORDEREDICT |
|
PATH_MODULES |
|
PRINT_LOCK |
|
PROJECT_TEMPLATE |
|
STRING |
|
TERMINUS_C3_PRIME_HYDROXYL |
|
TERMINUS_C5_PRIME_HYDROXYL |
|
TERMINUS_C5_PRIME_PHOSPHATE |
|
TERMINUS_C_AMIDO |
|
TERMINUS_C_CARBOXYL |
|
TERMINUS_C_STANDARD |
|
TERMINUS_N_AMINYL |
|
TERMINUS_N_STANDARD |
|
TOPOLOGY_IUPAC |
|
TUPLE |
|
TYPES |
|
TYPE_AMINO_ACID |
|
TYPE_DNA_BASE |
|
TYPE_NONBASE |
|
TYPE_RNA_BASE |
|
UNICODE |
|
VL_LOW |
|
VL_SETTINGS |
|
VL_STANDARD |
|
YES |