:autogenerated:

aria.core.Topology module
=========================

.. currentmodule:: aria.core.Topology

.. automodule:: aria.core.Topology
   :members: ALWAYS, ARIA_ENV, ARRAY, ATOM_NOMENCLATURES, ATOM_TYPE_UNKNOWN, AtomGroup, AtomGroupSettings, AtomGroupXMLPickler, BOOL, BaseAtom, BaseAtomSettings, BaseAtomXMLPickler, BaseResidue, BaseResidueSettings, BaseResidueXMLPickler, CCPN_EXTENSION, DICT, EQUIV_AROMATIC, EQUIV_ISOPROPYL, EQUIV_METHYL, EQUIV_METHYLENE, EQUIV_NTERMINUS, EquivalentGroup, EquivalentGroupSettings, EquivalentGroupXMLPickler, FLOAT, FLOAT64, GZIP, INT, LIST, MODULE_NAME, NO, NOMENCLATURE_IUPAC, NONE, ORDEREDICT, PATH_MODULES, PRINT_LOCK, PROJECT_TEMPLATE, STRING, TERMINUS_C3_PRIME_HYDROXYL, TERMINUS_C5_PRIME_HYDROXYL, TERMINUS_C5_PRIME_PHOSPHATE, TERMINUS_C_AMIDO, TERMINUS_C_CARBOXYL, TERMINUS_C_STANDARD, TERMINUS_N_AMINYL, TERMINUS_N_STANDARD, TOPOLOGY_IUPAC, TUPLE, TYPES, TYPE_AMINO_ACID, TYPE_DNA_BASE, TYPE_NONBASE, TYPE_RNA_BASE, Terminus, TerminusSettings, TerminusXMLPickler, Topology, TopologyXMLPickler, UNICODE, VL_LOW, VL_SETTINGS, VL_STANDARD, YES, load_topology
   :undoc-members:
   :show-inheritance:
   :member-order: bysource

Summary
-------

Classes:

.. autosummary::
   :nosignatures:

   AtomGroup
   AtomGroupSettings
   AtomGroupXMLPickler
   BaseAtom
   BaseAtomSettings
   BaseAtomXMLPickler
   BaseResidue
   BaseResidueSettings
   BaseResidueXMLPickler
   EquivalentGroup
   EquivalentGroupSettings
   EquivalentGroupXMLPickler
   Terminus
   TerminusSettings
   TerminusXMLPickler
   Topology
   TopologyXMLPickler

Functions:

.. autosummary::
   :nosignatures:

   load_topology

Data:

.. autosummary::
   :nosignatures:

   ALWAYS
   ARIA_ENV
   ARRAY
   ATOM_NOMENCLATURES
   ATOM_TYPE_UNKNOWN
   BOOL
   CCPN_EXTENSION
   DICT
   EQUIV_AROMATIC
   EQUIV_ISOPROPYL
   EQUIV_METHYL
   EQUIV_METHYLENE
   EQUIV_NTERMINUS
   FLOAT
   FLOAT64
   GZIP
   INT
   LIST
   MODULE_NAME
   NO
   NOMENCLATURE_IUPAC
   NONE
   ORDEREDICT
   PATH_MODULES
   PRINT_LOCK
   PROJECT_TEMPLATE
   STRING
   TERMINUS_C3_PRIME_HYDROXYL
   TERMINUS_C5_PRIME_HYDROXYL
   TERMINUS_C5_PRIME_PHOSPHATE
   TERMINUS_C_AMIDO
   TERMINUS_C_CARBOXYL
   TERMINUS_C_STANDARD
   TERMINUS_N_AMINYL
   TERMINUS_N_STANDARD
   TOPOLOGY_IUPAC
   TUPLE
   TYPES
   TYPE_AMINO_ACID
   TYPE_DNA_BASE
   TYPE_NONBASE
   TYPE_RNA_BASE
   UNICODE
   VL_LOW
   VL_SETTINGS
   VL_STANDARD
   YES





Reference
---------